Welcome to the MuLiMs suite of the TOMOCOMD-CAMPS software!!!! This is a new version of the TOMOCOMD-CAMPS software (MuLiMs suite). Thank you for choosing this program!!!

TOMOCOMD-CAMPS is an interactive and user-friendly open source, parallel and multi-platform application designed to calculate 1/2/3-D numerical descriptors (indices) for protein and peptide structures, with the objective of characterizing or discriminating among them. This software is comprised of one suite named MuLiMs (Multi-Linear Maps) with parallel functionalities.

This suite includes a set of modules derived from algebraic strategies. It consists of three modules: 1) MuLiMs-MGCoMPAs (acronym of Multi-Linear Maps based on Graph–Theoretic Contact Matrices of 1/2D-Proteins and Amino-Acids Weightings), 2) MuLiMs-MCoMPAs (acronym of Multi-Linear Maps based on N-Metric and Contact Matrices of 3D-Protein and Amino-Acids Weightings) and 3) MuLiMs-SCoMPAs (acronym of Multi-Linear Maps based on Surface Contact Matrices of 3D-Protein and Amino-Acid Weightings).

In this application, only MuLiMs-MCoMPAs module is included, which is for the calculation of 3D molecular descriptors based on the two-linear (bilinear) algebraic forms. This new version has some relevant features, such as:

SYSTEM REQUIREMENTS

Hardware:

Operation system

INPUT FILE MODES TOMOCOMD-CAMPS accepts and processes protein and peptide files in PDB format (*.pdb and *.ent). Click the “input” icon on the main window to load the protein files.

OUTPUT FILE MODES The default output format is tabbed ASCII files (.txt). The output data could be directly saved as excel workbook files (*.csv) or Weka files (.Arff) if a data processing software that provides for this option is installed. Click the “output” icon on the main window to define the disk location of the output data file, file name and file format. The output files contain by default results for invariant (molecular descriptors) computations exclusively. However, the output files could contain results for LOVIs (atomic descriptors) and Matrices if desired. Click the show report checkbox, available from the drop-down list of the Options Menu bar, to select this option (also accessible from the icon bar).