The ToMoCoMD-CAMPS MuLiMs software allows the calculation of algebraic forms-based biomacromolecular descriptors. Here, three modules are included:
- MuLiMs-GCoMPAs
- MuLiMs-MCoMPAs
- MuLiMs-SCoMPAs
These module are based on the application of mathematical n-linear transformations using 2-3 n-tuple matrix representations. This version has some relevant features, such as:
- One chemical input format (PDB files)
- Sixteen properties as amino-acid weightings: side-chain mass, volume and so on
- Three matrix representations: non-, simple-stochastic and mutual probability.
- Two matrix forms by using cutoffs (lag k/r)
- Thirty local indices clasified into three categories: amino-acid type, secondary structure preference and R groups
- Three output file formats: Space Delimited Text file, Weka ARFF file and Comma Separated Values file.
- The distance to the protein center could be into consideration as diagonal entries
- Several aggregation operators that generalize the initial form of obtaining indices from amino acidic
(or fragment) contributions; the new indices are obtained by using these invariants over the LAIs (Local Amino acidic Invariants
) vector that include amino acidic indices
- Calculations with enhanced speed by using of all CPU cores
Thank you for using this program!!!